PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18900.4
Common NameLR48_Vigan07g269300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 124aa    MW: 13899.6 Da    PI: 6.9723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18900.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59.3e-152441055
             AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +k+g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Vang01g18900.4  2 RKWGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 44
                    46**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-25153IPR001471AP2/ERF domain
SMARTSM003801.1E-28158IPR001471AP2/ERF domain
PROSITE profilePS5103219.124152IPR001471AP2/ERF domain
CDDcd000186.35E-24154No hitNo description
SuperFamilySSF541716.41E-18253IPR016177DNA-binding domain
PfamPF008472.5E-8244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYTTPVA AARAYDTAVF YLRGPSARLN FPELLFQDEV  60
DGANDDDSVN MSADSIRRKA TQVGARVDAL QTALHHHAPS HNPTLISLKP DLNEFPKLED  120
LQD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503733.12e-87PREDICTED: ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC302e-45RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A0L9V2Q53e-88A0A0L9V2Q5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RQD14e-88A0A0S3RQD1_PHAAN; Uncharacterized protein
STRINGGLYMA14G09320.12e-69(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.11e-46related to AP2 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]